Detailed information of SNP:
|
SNP ID:
sf1218082226(Gbrowse)
Chromosome: chr12 Position: 18082226 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 62.79% | 37.21% |
| All Indica | 799 | 39.17% | 60.83% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 12.80% | 87.20% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218082226 | A->G | INTERGENIC | None |