Detailed information of SNP:
|
SNP ID:
sf1218083951(Gbrowse)
Chromosome: chr12 Position: 18083951 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.85% | 26.15% |
| All Indica | 799 | 88.11% | 11.89% |
| All Japonica | 497 | 50.70% | 49.30% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 58.21% | 41.79% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218083951 | C->T | LOC_Os12g30170(LOC_Os12g30170.1) | SNPs that introduce initiation codons |