Detailed information of SNP:
|
SNP ID:
sf1218084853(Gbrowse)
Chromosome: chr12 Position: 18084853 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 57.06% | 42.94% |
| All Indica | 795 | 30.82% | 69.18% |
| All Japonica | 492 | 93.09% | 6.91% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 12.83% | 87.17% |
| Indica II | 211 | 63.03% | 36.97% |
| Indica Intermediate | 210 | 30.48% | 69.52% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218084853 | T->C | LOC_Os12g30170(LOC_Os12g30170.1) | UTR_3_PRIME |