Detailed information of SNP:
|
SNP ID:
sf1218086448(Gbrowse)
Chromosome: chr12 Position: 18086448 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 79.03% | 20.97% |
| All Indica | 799 | 72.97% | 27.03% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 65 | 29.23% | 70.77% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218086448 | G->A | INTERGENIC | None |