Detailed information of SNP:
|
SNP ID:
sf1218090419(Gbrowse)
Chromosome: chr12 Position: 18090419 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 66.22% | 33.78% |
| All Indica | 796 | 75.00% | 25.00% |
| All Japonica | 497 | 50.91% | 49.09% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 211 | 58.29% | 41.71% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218090419 | C->T | LOC_Os12g30180(LOC_Os12g30180.1) | INTRON |