Detailed information of SNP:
|
SNP ID:
sf1218093213(Gbrowse)
Chromosome: chr12 Position: 18093213 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 95.13% | 4.87% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218093213 | C->T | LOC_Os12g30190(LOC_Os12g30190.1) | Non-Synonymous SNP |