Detailed information of SNP:
|
SNP ID:
sf1218093638(Gbrowse)
Chromosome: chr12 Position: 18093638 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 84.06% | 15.94% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 479 | 56.58% | 43.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 39.62% | 60.38% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218093638 | T->C | INTERGENIC | None |