Detailed information of SNP:
|
SNP ID:
sf1218094960(Gbrowse)
Chromosome: chr12 Position: 18094960 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 72.24% | 27.76% |
| All Indica | 775 | 52.26% | 47.74% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 360 | 28.61% | 71.39% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 206 | 53.40% | 46.60% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218094960 | G->A | INTERGENIC | None |