Detailed information of SNP:
|
SNP ID:
sf1218097924(Gbrowse)
Chromosome: chr12 Position: 18097924 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 62.88% | 37.12% |
| All Indica | 767 | 94.65% | 5.35% |
| All Japonica | 495 | 11.92% | 88.08% |
| Aus | 58 | 82.76% | 17.24% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 200 | 96.00% | 4.00% |
| Indica Intermediate | 195 | 88.72% | 11.28% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218097924 | A->C | INTERGENIC | None |