Detailed information of SNP:
|
SNP ID:
sf1218098877(Gbrowse)
Chromosome: chr12 Position: 18098877 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 53.92% | 46.08% |
| All Indica | 744 | 25.27% | 74.73% |
| All Japonica | 496 | 93.55% | 6.45% |
| Aus | 58 | 63.79% | 36.21% |
| Indica I | 363 | 10.19% | 89.81% |
| Indica II | 187 | 54.55% | 45.45% |
| Indica Intermediate | 194 | 25.26% | 74.74% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218098877 | C->T | LOC_Os12g30200(LOC_Os12g30200.1) | INTRON |