Detailed information of SNP:
|
SNP ID:
sf1218099012(Gbrowse)
Chromosome: chr12 Position: 18099012 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 52.94% | 47.06% |
| All Indica | 783 | 83.01% | 16.99% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 60 | 56.67% | 43.33% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 205 | 65.37% | 34.63% |
| Indica Intermediate | 204 | 81.86% | 18.14% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218099012 | A->C | LOC_Os12g30200(LOC_Os12g30200.1) | INTRON |