Detailed information of SNP:
|
SNP ID:
sf1218099241(Gbrowse)
Chromosome: chr12 Position: 18099241 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 82.35% | 17.65% |
| All Indica | 793 | 95.84% | 4.16% |
| All Japonica | 497 | 58.95% | 41.05% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 207 | 90.82% | 9.18% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218099241 | C->T | LOC_Os12g30200(LOC_Os12g30200.1) | Synonymous |