Detailed information of SNP:
|
SNP ID:
sf1218099266(Gbrowse)
Chromosome: chr12 Position: 18099266 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 57.58% | 42.42% |
| All Indica | 786 | 89.95% | 10.05% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 53 | 77.36% | 22.64% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 208 | 87.02% | 12.98% |
| Indica Intermediate | 206 | 83.01% | 16.99% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218099266 | T->C | LOC_Os12g30200(LOC_Os12g30200.1) | Non-Synonymous SNP |