Detailed information of SNP:
|
SNP ID:
sf1218099375(Gbrowse)
Chromosome: chr12 Position: 18099375 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 52.05% | 47.95% |
| All Indica | 756 | 23.68% | 76.32% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 59 | 50.85% | 49.15% |
| Indica I | 368 | 10.33% | 89.67% |
| Indica II | 194 | 46.91% | 53.09% |
| Indica Intermediate | 194 | 25.77% | 74.23% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218099375 | G->T | LOC_Os12g30200(LOC_Os12g30200.1) | Non-Synonymous SNP |