Detailed information of SNP:
|
SNP ID:
sf1218100648(Gbrowse)
Chromosome: chr12 Position: 18100648 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 57.89% | 42.11% |
| All Indica | 760 | 88.55% | 11.45% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 62 | 79.03% | 20.97% |
| Indica I | 368 | 94.29% | 5.71% |
| Indica II | 196 | 85.20% | 14.80% |
| Indica Intermediate | 196 | 81.12% | 18.88% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218100648 | T->A | LOC_Os12g30200(LOC_Os12g30200.1) | Non-Synonymous SNP |