Detailed information of SNP:
|
SNP ID:
sf1218106458(Gbrowse)
Chromosome: chr12 Position: 18106458 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 95.91% | 4.09% |
| All Indica | 769 | 97.14% | 2.86% |
| All Japonica | 465 | 95.05% | 4.95% |
| Aus | 55 | 87.27% | 12.73% |
| Indica I | 368 | 98.91% | 1.09% |
| Indica II | 193 | 94.82% | 5.18% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 323 | 97.21% | 2.79% |
| Tropical Japonica | 81 | 86.42% | 13.58% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218106458 | C->T | LOC_Os12g30214(LOC_Os12g30214.1) | Synonymous |