Detailed information of SNP:
|
SNP ID:
sf1218108066(Gbrowse)
Chromosome: chr12 Position: 18108066 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 90.74% | 9.26% |
| All Indica | 794 | 87.15% | 12.85% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 57 | 91.23% | 8.77% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 208 | 75.48% | 24.52% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218108066 | T->C | LOC_Os12g30214(LOC_Os12g30214.1) | Synonymous |