Detailed information of SNP:
|
SNP ID:
sf1218124011(Gbrowse)
Chromosome: chr12 Position: 18124011 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 60.28% | 39.72% |
| All Indica | 791 | 93.81% | 6.19% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 370 | 96.49% | 3.51% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218124011 | A->C | LOC_Os12g30250(LOC_Os12g30250.1) | Non-Synonymous SNP |