Detailed information of SNP:
|
SNP ID:
sf1218124908(Gbrowse)
Chromosome: chr12 Position: 18124908 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 56.80% | 43.20% |
| All Indica | 767 | 90.09% | 9.91% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 367 | 94.82% | 5.18% |
| Indica II | 198 | 88.38% | 11.62% |
| Indica Intermediate | 202 | 83.17% | 16.83% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218124908 | T->C | LOC_Os12g30260(LOC_Os12g30260.1) | Non-Synonymous SNP |