Detailed information of SNP:
|
SNP ID:
sf1218125018(Gbrowse)
Chromosome: chr12 Position: 18125018 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 54.06% | 45.94% |
| All Indica | 776 | 82.86% | 17.14% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 64 | 64.06% | 35.94% |
| Indica I | 369 | 91.60% | 8.40% |
| Indica II | 201 | 73.63% | 26.37% |
| Indica Intermediate | 206 | 76.21% | 23.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218125018 | T->G | LOC_Os12g30260(LOC_Os12g30260.1) | Non-Synonymous SNP |