Detailed information of SNP:
|
SNP ID:
sf1218125184(Gbrowse)
Chromosome: chr12 Position: 18125184 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 54.01% | 45.99% |
| All Indica | 778 | 27.63% | 72.37% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 370 | 9.73% | 90.27% |
| Indica II | 203 | 56.16% | 43.84% |
| Indica Intermediate | 205 | 31.71% | 68.29% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218125184 | G->A | LOC_Os12g30260(LOC_Os12g30260.1) | Synonymous |