Detailed information of SNP:
|
SNP ID:
sf1218125199(Gbrowse)
Chromosome: chr12 Position: 18125199 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.21% | 4.79% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218125199 | C->T | LOC_Os12g30260(LOC_Os12g30260.1) | Non-Synonymous SNP |