Detailed information of SNP:
|
SNP ID:
sf1218125239(Gbrowse)
Chromosome: chr12 Position: 18125239 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 53.82% | 46.18% |
| All Indica | 783 | 27.46% | 72.54% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 371 | 9.70% | 90.30% |
| Indica II | 207 | 57.00% | 43.00% |
| Indica Intermediate | 205 | 29.76% | 70.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218125239 | A->G | LOC_Os12g30260(LOC_Os12g30260.1) | INTRON |