Detailed information of SNP:
|
SNP ID:
sf1218125327(Gbrowse)
Chromosome: chr12 Position: 18125327 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 90.65% | 9.35% |
| All Indica | 792 | 86.74% | 13.26% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 209 | 67.46% | 32.54% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218125327 | T->C | LOC_Os12g30260(LOC_Os12g30260.1) | Non-Synonymous SNP |