Detailed information of SNP:
|
SNP ID:
sf1218125773(Gbrowse)
Chromosome: chr12 Position: 18125773 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 54.97% | 45.03% |
| All Indica | 791 | 29.33% | 70.67% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 372 | 11.29% | 88.71% |
| Indica II | 211 | 58.29% | 41.71% |
| Indica Intermediate | 208 | 32.21% | 67.79% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218125773 | A->T | LOC_Os12g30260(LOC_Os12g30260.1) | INTRON |