Detailed information of SNP:
|
SNP ID:
sf1218126355(Gbrowse)
Chromosome: chr12 Position: 18126355 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 62.07% | 37.93% |
| All Indica | 740 | 40.00% | 60.00% |
| All Japonica | 496 | 93.35% | 6.65% |
| Aus | 65 | 60.00% | 40.00% |
| Indica I | 354 | 27.40% | 72.60% |
| Indica II | 191 | 62.30% | 37.70% |
| Indica Intermediate | 195 | 41.03% | 58.97% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218126355 | G->A | LOC_Os12g30260(LOC_Os12g30260.1) | INTRON |