Detailed information of SNP:
|
SNP ID:
sf1218126422(Gbrowse)
Chromosome: chr12 Position: 18126422 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 60.69% | 39.31% |
| All Indica | 776 | 37.76% | 62.24% |
| All Japonica | 494 | 93.93% | 6.07% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 364 | 19.78% | 80.22% |
| Indica II | 207 | 66.18% | 33.82% |
| Indica Intermediate | 205 | 40.98% | 59.02% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218126422 | G->A | LOC_Os12g30260(LOC_Os12g30260.1) | INTRON |