Detailed information of SNP:
|
SNP ID:
sf1218126489(Gbrowse)
Chromosome: chr12 Position: 18126489 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 55.98% | 44.02% |
| All Indica | 786 | 85.62% | 14.38% |
| All Japonica | 497 | 9.05% | 90.95% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 208 | 78.85% | 21.15% |
| Indica Intermediate | 204 | 81.37% | 18.63% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218126489 | A->T | LOC_Os12g30260(LOC_Os12g30260.1) | INTRON |