Detailed information of SNP:
|
SNP ID:
sf1218132560(Gbrowse)
Chromosome: chr12 Position: 18132560 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1141 | 94.13% | 5.87% |
| All Indica | 566 | 92.05% | 7.95% |
| All Japonica | 489 | 97.75% | 2.25% |
| Aus | 40 | 92.50% | 7.50% |
| Indica I | 292 | 86.64% | 13.36% |
| Indica II | 129 | 98.45% | 1.55% |
| Indica Intermediate | 145 | 97.24% | 2.76% |
| Temperate Japonica | 329 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 32 | 84.38% | 15.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218132560 | C->T | LOC_Os12g30270(LOC_Os12g30270.1) | INTRON |