Detailed information of SNP:
|
SNP ID:
sf1218132655(Gbrowse)
Chromosome: chr12 Position: 18132655 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 94.01% | 5.99% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 436 | 82.11% | 17.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 298 | 91.61% | 8.39% |
| Tropical Japonica | 79 | 46.84% | 53.16% |
| Japonica Intermediate | 59 | 81.36% | 18.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218132655 | G->A | LOC_Os12g30270(LOC_Os12g30270.1) | Synonymous |