Detailed information of SNP:
|
SNP ID:
sf1218133769(Gbrowse)
Chromosome: chr12 Position: 18133769 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 73.38% | 26.62% |
| All Indica | 797 | 88.08% | 11.92% |
| All Japonica | 496 | 51.01% | 48.99% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 334 | 43.71% | 56.29% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218133769 | G->A | LOC_Os12g30270(LOC_Os12g30270.1) | Synonymous |