Detailed information of SNP:
|
SNP ID:
sf1218133804(Gbrowse)
Chromosome: chr12 Position: 18133804 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 51.93% | 48.07% |
| All Indica | 784 | 78.44% | 21.56% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 206 | 55.83% | 44.17% |
| Indica Intermediate | 204 | 76.47% | 23.53% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218133804 | G->C | LOC_Os12g30270(LOC_Os12g30270.1) | Non-Synonymous SNP |