Detailed information of SNP:
|
SNP ID:
sf1218136309(Gbrowse)
Chromosome: chr12 Position: 18136309 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 51.89% | 48.11% |
| All Indica | 788 | 78.17% | 21.83% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 61 | 62.30% | 37.70% |
| Indica I | 373 | 91.69% | 8.31% |
| Indica II | 209 | 55.02% | 44.98% |
| Indica Intermediate | 206 | 77.18% | 22.82% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218136309 | T->C | INTERGENIC | None |