Detailed information of SNP:
|
SNP ID:
sf1218137064(Gbrowse)
Chromosome: chr12 Position: 18137064 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 58.00% | 42.00% |
| All Indica | 784 | 87.88% | 12.12% |
| All Japonica | 497 | 10.26% | 89.74% |
| Aus | 64 | 71.88% | 28.12% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 206 | 83.01% | 16.99% |
| Indica Intermediate | 204 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218137064 | A->G | LOC_Os12g30280(LOC_Os12g30280.1) | Non-Synonymous SNP |