Detailed information of SNP:
|
SNP ID:
sf1218137081(Gbrowse)
Chromosome: chr12 Position: 18137081 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 56.89% | 43.11% |
| All Indica | 795 | 31.32% | 68.68% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 13.90% | 86.10% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218137081 | C->T | LOC_Os12g30280(LOC_Os12g30280.1) | Synonymous |