Detailed information of SNP:
|
SNP ID:
sf1218137476(Gbrowse)
Chromosome: chr12 Position: 18137476 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 79.41% | 20.59% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 51.91% | 48.09% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 58.81% | 41.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218137476 | C->T | INTERGENIC | None |