Detailed information of SNP:
|
SNP ID:
sf1218139406(Gbrowse)
Chromosome: chr12 Position: 18139406 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 59.76% | 40.24% |
| All Indica | 791 | 90.27% | 9.73% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 208 | 87.50% | 12.50% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218139406 | T->C | LOC_Os12g30290(LOC_Os12g30290.1) | Non-Synonymous SNP |