Detailed information of SNP:
|
SNP ID:
sf1218139438(Gbrowse)
Chromosome: chr12 Position: 18139438 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 57.66% | 42.34% |
| All Indica | 783 | 32.57% | 67.43% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 371 | 11.86% | 88.14% |
| Indica II | 205 | 65.85% | 34.15% |
| Indica Intermediate | 207 | 36.71% | 63.29% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218139438 | G->A | LOC_Os12g30290(LOC_Os12g30290.1) | Non-Synonymous SNP |