Detailed information of SNP:
|
SNP ID:
sf1218139456(Gbrowse)
Chromosome: chr12 Position: 18139456 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 53.41% | 46.59% |
| All Indica | 777 | 28.31% | 71.69% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 369 | 10.84% | 89.16% |
| Indica II | 201 | 55.72% | 44.28% |
| Indica Intermediate | 207 | 32.85% | 67.15% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218139456 | G->A | LOC_Os12g30290(LOC_Os12g30290.1) | Non-Synonymous SNP |