Detailed information of SNP:
|
SNP ID:
sf1218139463(Gbrowse)
Chromosome: chr12 Position: 18139463 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 79.10% | 20.90% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 496 | 50.81% | 49.19% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 58.08% | 41.92% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218139463 | C->T | LOC_Os12g30290(LOC_Os12g30290.1) | Non-Synonymous SNP |