Detailed information of SNP:
|
SNP ID:
sf1218140197(Gbrowse)
Chromosome: chr12 Position: 18140197 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 62.84% | 37.16% |
| All Indica | 792 | 40.53% | 59.47% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 372 | 18.55% | 81.45% |
| Indica II | 210 | 78.10% | 21.90% |
| Indica Intermediate | 210 | 41.90% | 58.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218140197 | G->A | LOC_Os12g30290(LOC_Os12g30290.1) | Non-Synonymous SNP |