Detailed information of SNP:
|
SNP ID:
sf1218140271(Gbrowse)
Chromosome: chr12 Position: 18140271 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.24% | 42.76% |
| All Indica | 795 | 32.20% | 67.80% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 11.76% | 88.24% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 208 | 34.62% | 65.38% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218140271 | G->A | LOC_Os12g30290(LOC_Os12g30290.1) | Synonymous |