Detailed information of SNP:
|
SNP ID:
sf1218140318(Gbrowse)
Chromosome: chr12 Position: 18140318 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 52.98% | 47.02% |
| All Indica | 790 | 24.56% | 75.44% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 11.50% | 88.50% |
| Indica II | 209 | 41.15% | 58.85% |
| Indica Intermediate | 207 | 31.40% | 68.60% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218140318 | T->C | LOC_Os12g30290(LOC_Os12g30290.1) | Non-Synonymous SNP |