Detailed information of SNP:
|
SNP ID:
sf1218140425(Gbrowse)
Chromosome: chr12 Position: 18140425 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.92% | 43.08% |
| All Indica | 796 | 31.78% | 68.22% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 11.50% | 88.50% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 210 | 33.81% | 66.19% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218140425 | A->G | LOC_Os12g30290(LOC_Os12g30290.1) | Non-Synonymous SNP |