Detailed information of SNP:
|
SNP ID:
sf1218140520(Gbrowse)
Chromosome: chr12 Position: 18140520 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 55.90% | 44.10% |
| All Indica | 787 | 31.13% | 68.87% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 374 | 11.23% | 88.77% |
| Indica II | 207 | 63.77% | 36.23% |
| Indica Intermediate | 206 | 34.47% | 65.53% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218140520 | C->T | INTERGENIC | None |