Detailed information of SNP:
|
SNP ID:
sf1218140651(Gbrowse)
Chromosome: chr12 Position: 18140651 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 54.11% | 45.89% |
| All Indica | 786 | 82.44% | 17.56% |
| All Japonica | 496 | 9.48% | 90.52% |
| Aus | 63 | 63.49% | 36.51% |
| Indica I | 372 | 91.40% | 8.60% |
| Indica II | 208 | 71.63% | 28.37% |
| Indica Intermediate | 206 | 77.18% | 22.82% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 26.88% | 73.12% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218140651 | A->G | INTERGENIC | None |