Detailed information of SNP:
|
SNP ID:
sf1218140672(Gbrowse)
Chromosome: chr12 Position: 18140672 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 78.01% | 21.99% |
| All Indica | 796 | 95.98% | 4.02% |
| All Japonica | 497 | 50.70% | 49.30% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 57.61% | 42.39% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218140672 | C->T | INTERGENIC | None |