Detailed information of SNP:
|
SNP ID:
sf1218140736(Gbrowse)
Chromosome: chr12 Position: 18140736 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 52.76% | 47.24% |
| All Indica | 792 | 24.24% | 75.76% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 11.47% | 88.53% |
| Indica II | 210 | 40.95% | 59.05% |
| Indica Intermediate | 207 | 30.43% | 69.57% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218140736 | A->G | INTERGENIC | None |