Detailed information of SNP:
|
SNP ID:
sf1218140784(Gbrowse)
Chromosome: chr12 Position: 18140784 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 52.83% | 47.17% |
| All Indica | 780 | 80.64% | 19.36% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 370 | 90.54% | 9.46% |
| Indica II | 205 | 69.76% | 30.24% |
| Indica Intermediate | 205 | 73.66% | 26.34% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218140784 | A->G | INTERGENIC | None |