Detailed information of SNP:
|
SNP ID:
sf1218141077(Gbrowse)
Chromosome: chr12 Position: 18141077 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 61.75% | 38.25% |
| All Indica | 791 | 39.06% | 60.94% |
| All Japonica | 495 | 93.74% | 6.26% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 372 | 19.09% | 80.91% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 207 | 44.44% | 55.56% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218141077 | T->C | INTERGENIC | None |